PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1136s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 407aa    MW: 46093.6 Da    PI: 8.9212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1136s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18163213256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Kalax.1136s0001.1.p 163 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAAMAYDRQAFKLRGE 213
                          59******9.**********966...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.26E-33162221No hitNo description
Gene3DG3DSA:3.30.730.101.1E-31163221IPR001471AP2/ERF domain
PROSITE profilePS5103222.879163220IPR001471AP2/ERF domain
SMARTSM003801.8E-38163226IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23163221IPR016177DNA-binding domain
PfamPF008473.2E-12164213IPR001471AP2/ERF domain
PRINTSPR003676.7E-11164175IPR001471AP2/ERF domain
PRINTSPR003676.7E-11186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MATSSDKDLD SYGRPLRKGR SPDRQNPYQI HNNSIMLAQQ TPLHQSSSSS SSRLVFPFPL  60
DASEPQFNQQ QQRQQYSSIP YYPPHTQQHQ MISFAAAHQQ QRSGGDAAAV TPQQQQHMLQ  120
YWSDSLNLSP RGKMLMMMNR LGVQERTSAL PMPQLQPIHT TKLYRGVRQR HWGKWVAEIR  180
LPRDRTRLWL GTFDTAEDAA MAYDRQAFKL RGENARLNFP ERFLSKERVI STAPSSPSSA  240
PATSTNPPPP NVVPDSKLED CFKAEERDLS EVLNNSTSTE TADCASNNNE FVWGDMAEAW  300
YNAIPAGWGP ESPVWDNLDA TNQLLLHPNN LPPSTFSQHN EQIAELSVAW VAHPLHLDSV  360
RPYSLRTNQN LGVVRQYTVY LHAKKPDKLR VQANLAINLW TKTIFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21162227470ATERF1
3gcc_A5e-21162227470ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043551.11e-91AP2/ERF domain-containing transcription factor, putative
TrEMBLA0A061E4171e-91A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGPOPTR_0013s13920.17e-79(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.12e-60ERF family protein